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Align your sequence(s)

tRNA synthetases class II (G, H, P and S)

class : alpha plus beta number of structures : 5 average size : 307 average PID : 19 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1kmm rasmol 4 A 325 A histidyl-tRNA synthetase Escherichia coli 2.6 22.1
1adj rasmol 2 A 325 A histidyl-tRNA synthetase Thermus aquaticus 2.7 21.7
1sry rasmol 111 A 421 A seryl-tRNA synthetase Thermus aquaticus 2.5 18.4
1qf6 rasmol 241 A 531 A threonyl-tRNA synthetase Escherichia coli 2.90 19.5
1ati rasmol 1 A 394 A glycyl-tRNA synthetase Thermus aquaticus 2.75 22.7
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : tRNA-synt_2b  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1kmma  (   4 )                                               ni-qair
1adja  (   2 )                                               ta-ravr
1srya  ( 111 )    vggeeanreikrvggppefsfppl---dhvaLMekNgWweprisqvsg-s
1qf6a  ( 241 )                          kr---dHrkIGkqldlYhmq--e-ea-p
1atia  (   1 )                         aAssldeLvalCkrrgfIfqsseiygGlq
                                                                    

                           60        70        80        90        100 
1kmma  (  10 )    gmndylpgetaiwqrIegtLknvLg-syg-YseirLpiveqTplFkrAIg
1adja  (   8 )    GtkdlfgkelrmhqrIvatArkvLe-aag-AlelvTpifeetqvFekGVg
1srya  ( 157 )    rsyaLkgdLalYelaLlrFAmdfMa-rrg-FlpmtLpsyarekaFlGTGh
1qf6a  ( 262 )    GmVfwhndGwtiFreLevfVrsklk-eyq-YqevkgpfmmdrvlWekTgh
1atia  (  30 )    GvydygplGvelknnLkqaWwrrNvyerddMegldasvlthrlvLhySgh
                        aaaaaaaaaaaaaaaaaaa      bb     bbb aaaaaa  

                           110       120       130       140       150 
1kmma  (  58 )    evtd----VVeke-------Mytfedr-----ngdslTlrPEgtAgCVrA
1adja  (  56 )    aaTd----ivrke-------Mftfqdr-----ggrslTlRPeGtAAMVrA
1srya  ( 205 )    Fpay------rdq-------Vwaia--------etdlylTgtAeVvLNal
1qf6a  ( 310 )    wdny------kda-------Mfttsse------nreyCiKPmNcPgHVqi
1atia  (  80 )    eatfadpmvdnwtppryfnMMfqdlrgprggrgl-LaylRPeTAQgIFvn
                                        bbb          bbbb    aaaaaa 

                           160       170       180       190       200 
1kmma  (  92 )    gieh----g--lLy-nqeqrlwYigpMfrher-------pqkGryrqfhq
1adja  (  90 )    Yleh----g--MkvwpqpvrLWMagpMfraer-------pqkgryrqfhq
1srya  ( 234 )    hsge----ilp--yeaLplryAGyApAfrseagsfgkdVrGLMrVhqfhk
1qf6a  ( 341 )    Fnqg----lks--yrdLplrMAEFGsChrnep-s--gslhGLMrVrgftq
1atia  ( 197 )    Fknvldatsrk-----lgFGIAQigkAfrnEitPr----nFIFrvrefeq
                  a                 bbbbbbbbbb                  bbbb

                           210       220       230       240       250 
1kmma  ( 128 )    LGCEVFglq----gpdIDAeLImLTarWWraLgI-sehVtLeLNSIGsle
1adja  ( 127 )    VNYEALgse----npiLDAeAVvlLyeCLkelgL-r-rLkVkLSSVGdpe
1srya  ( 278 )    VEQYVLTeasleASdraFqeLleNAeeILrlLeL---pYrlveVat----
1qf6a  ( 382 )    DdAHIFCt--eeqIrdeVngCIrLVydMYstfgF--ekivVkLStrpe--
1atia  ( 238 )    MEIEYFVr--pgeDeywhryWveeRlkWWqemgLsrenLvpyqqpp----
                  bbbbbb        aaaaaaaaaaaaaaaaa        bbbb       

                           260       270       280       290       300 
1kmma  ( 173 )    Aranyrdalvafleqh----------------------------------
1adja  ( 171 )    drarYnayLrevLsphreaLsedSkerLeenPMRIldSkserDqallkel
1srya  ( 321 )    --------------------------------------------------
1qf6a  ( 426 )    --------------------------------------------------
1atia  ( 282 )    --------------------------------------------------
                                                                    

                           310       320       330       340       350 
1kmma  ( 224 )    ---algdyldeeSrehfagLcklLesagiaytvnqrlvrgldyynrTVFe
1adja  ( 221 )    gVrpMldfLgeeArahLkeVerhLerlsVpyelepalvrgldYYvrTAFe
1srya  ( 321 )    -----------------------------------gdm--gpGk-wrqVd
1qf6a  ( 426 )    -krigs---demWdrAeadLavALeennipfeyqlgeG--aFyG--PkIe
1atia  ( 282 )    -----------------------------------ess--ahyA-katvd
                                                                bbbb

                           360       370       380       390       400 
1kmma  ( 271 )    WvTn--slgsqgtVCaGGRYd-gLVeqLg---------------------
1adja  ( 271 )    VhHe--eigaqsaLgGGGRYD-gLSellg---------------------
1srya  ( 333 )    IeVyLPsegryreTHsCSALldwQArrAn---------------------
1qf6a  ( 468 )    FtLyDcl-drawqCGtVqLDf-sLPsrLs---------------------
1atia  ( 294 )    IlYrFph--gsleLEgIaQrtDFDLGShTkdqeaLgItarvlrNehstqr
                  bb          bbbbbbb    aaaa                       

                           410       420       430       440       450 
1kmma  ( 297 )    gr----------atpAVGFaMg--LErLVlLVqavnpefka         
1adja  ( 297 )    gp----------rVpGVGFaFg--VerValALeaEgfgLpe         
1srya  ( 362 )    LrYr-DpegrvryAyTLnNtALaT-PrILAMLLENHQlqdG-----rVrV
1qf6a  ( 495 )    AsYv-gednerkvPVMIHRaILgsMErFIGIltEefag            
1atia  ( 342 )    LAyrdpetgkwfVPyVIePsAg--VdrGVLAlLAeAFtreelpngeeriv
                                 bbbbbbb  aaaaaaaaaaa               

                           460     
1kmma                              
1adja                              
1srya  ( 405 )    PqaLipyMgkevLepcg
1qf6a                              
1atia  ( 390 )    lklkp            
                                   


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