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Align your sequence(s)

periplasmic binding protein -- sugar

class : alpha beta number of structures : 4 average size : 293 average PID : 24 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
2dri rasmol 1 - 271 - D-ribose binding protein Escherichia coli 1.60 19.40
1abe rasmol 2 - 306 - L-arabinose-binding protein Escherichia coli 1.70 13.70
1gca rasmol 1 - 309 - D-galactose-binding periplasmic protein Salmonella typhimurium 1.7 19
1rpj rasmol 1 A 288 A D-allose-binding protein Escherichia coli 1.80 19.4
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Peripla_BP_like  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
2dri   (   1 )     kdtIALVVStlnNpFFvsLkdgAqkeAdkl-gynLvvldSq--nnpakE
1abe   (   2 )     nlkLGFLVKqpeEpWFqtEwkfAdkAGkdl-gFeVikiaVp---dgekT
1gca   (   1 )    adtrIGVTIYkyddnFMsvVrkaIekdGksapdVqllmndSq--ndqskQ
1rpja  (   1 )     aaeYAVVLKTlsnpFWvdMkkgIedeaktl-gvsVdIfASpsegdfqsQ
                     bbbbbb     aaaaaaaaaaaaaaaaa   bbbbbb      aaaa

                           60        70        80        90        100 
2dri   (  47 )    lanVqdLtvrgTkILLINPTdSdaVgnAVkmAnqanipVITLDRqAt---
1abe   (  47 )    lnaIdsLaasgAkGFVICTPdpklGsaIvakArgydMkVIAVDDqFvnak
1gca   (  49 )    ndqIdvLlakgVkALAINLvdpaaAgtVIekArgqnvPVVFFNKePsrka
1rpja  (  49 )    lqlFedLSnknYkGIAFAPLssvnLVmPVArAwkkgIyLVNLDEkIdmdn
                  aaaaaaaa     bbbb        aaaaaaaaa    bbbb        

                           110       120       130       140       150 
2dri   (  94 )    ----kgevvShIASdNvlGGkiAGdyIAkkag----------egAkVIEL
1abe   (  97 )    gkpmd--tvPLVMMAAtkIGerQGqeLykeMqkrg-Wd---vkeSAVMAI
1gca   (  99 )    LdsYd--kAyYVGTdskeSGviQGdlIakhwqanqgwdlnkdgkIQYVLL
1rpja  (  99 )    LkkagGNVeAfVTTdnvaVGakGAsfIidklga---------eGgeVAII
                           bbbbb aaaaaaaaaaaaaaaa             bbbbbb

                           160       170       180       190       200 
2dri   ( 130 )    qGiagTSAareRgeGFqqAvaahk--Fn---vlasqpAdFdrikGlnvMq
1abe   ( 141 )    Ta-neldTArrRTtgSmdaLkaag--FpekqIyqvpTksndipgAfdAAn
1gca   ( 147 )    kGepgHpDAeaRttyVvkeLndkgIqTe---qLaldtAmWdtaqAkdkMd
1rpja  ( 140 )    eGkagNaSGeaRrnGAteaFkkas-qIk---lvasqpAdWdrikAldvAt
                  b     aaaaaaaaaaaaaaaa     b   bbbbbb    aaaaaaaaa

                           210       220       230       240       250 
2dri   ( 175 )    nlLt-ahp--dVqAVFAQNDeMAlGAlrALqtag-ks-dVmVVGFDGTpd
1abe   ( 188 )    smLv-qhpeVkhWLIVGMNDsTVlGGVrATegqgfkaadIIGIGING-vD
1gca   ( 194 )    awLsgpnan-kIEVVIANNDAMAmGAveALkahn-ks-sIpVFGVDALpe
1rpja  ( 186 )    nvLq-rnp--nIkAIYCANDtMAMGVaqAVanag-ktgkVlVVGTDGIpe
                  aaa          bbbb  aaaaaaaaaaaaa        bbbbb   aa

                           260       270       280       290       300 
2dri   ( 220 )    GekAVn---dgkLaATIaQlpdqIGakGVeTAdkvlkgekVq--------
1abe   ( 236 )    AvsELskaqatGFyGSLLPSPdvHGykSSemLynwvakdvePp-------
1gca   ( 241 )    AlalVk---sgaMaGTVlNdannQAkATfdLAknlAegkgAadgtswkie
1rpja  ( 232 )    ArkmVe---agqMtATVAQnpadIGatGLklMvdaeksgkvipldkap--
                  aaaaaa        bbbb  aaaaaaaaaaaaaaaa              

                           310       320       
2dri   ( 259 )    -akypv-dLklvvkq              
1abe   ( 279 )    -kftevtdvvlItrdnfkeeLekkglggk
1gca   ( 288 )    nkiVrV-pYvgVDkdnLseftqk      
1rpja  ( 277 )    -efklv-dSilvt-q              
                    bbbb   bbb                 


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