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Align your sequence(s)

retroviral integrase

class : alpha beta number of structures : 2 average size : 146 average PID : 24 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1vsd rasmol 54 - 199 - ASV-1 integrase core domain Avian sarcoma virus 1.70 N/A
1biz rasmol 54 A 208 A HIV-1 integrase core domain Human Immunodeficiency Virus I 1.95 21.2
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : rve  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1vsd   (  54 )    glgplqiWQTdFtleprMaprSwLAVTVdtassaiVVtQhgrvtsvaAqh
1biza  (  54 )    vdsspGiWQLdCthleg----kVILVAVHvaSgyIeAeVipaetgqeTAy
                        bbbbbbbb        bbbbbbb     bbbbbb    aaaaaa

                           60        70        80        90        100 
1vsd   ( 104 )    HWatAiavlgrPkaIkTdngsCFtsksTrewLarwgIahttgipgnsqgq
1biza  ( 100 )    FLlkLagrw-pVktVhTdngsnFtsttVkaacwwagIkqefg--------
                  aaaaaaaa     bbb         aaaaaaaaaa  bb           

                           110       120       130       140       150 
1vsd   ( 154 )    amVerAnrlLkdkIrvlAegdgfmkrIptskQgeLlakAmyalnhf    
1biza  ( 149 )    gviesmnkeLkkIIgqVrdqae--------hLktAVqmAvfiHnkkrkgg
                   aaaaaaaaaaaaaaaa              aaaaaaaaaaaaa      

                           160      
1vsd                                
1biza  ( 191 )    iggySagerIvdiiatdi
                                    


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