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Align your sequence(s)

Photosystem I psaA/psaB protein

class : membrane bound all alpha number of structures : 2 average size : 739 average PID : 48 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1jb0 rasmol 13 A 755 A photosystem I P700 chlorophyll A apoprotein A1 Synechococcus elongatus naegeli 2.50 19.9
1jb0 rasmol 1 B 739 B photosystem I P700 chlorophyll A apoprotein A2 Synechococcus elongatus naegeli 2.50 19.9
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : psaA_psaB  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1jb0a  (  13 )    rvvVdndpvptsfekwakpGhFDrtLargpqtTtwIWnLHALAHDFdtHt
1jb0b  (   1 )                   atkfPkfsqdLAq-dptTrriWYAIAmAHDFesHd
                                                   aaaaaaaa    333  

                           60        70        80        90        100 
1jb0a  (  63 )    s-dlediSrKIFSAHFGHLAVVFiWLSGMYfHGAkfSnYeaWLadptgik
1jb0b  (  35 )    gmteenlYQkIFasHFgHLAIIFLWVSGSLfHVAwqGnFeqWvqdpvntr
                     aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa   aaaaaa      

                           110       120       130       140       150 
1jb0a  ( 112 )    PSAQvVwpiv---gqgiLngdVgggfhGIqITSGLFQLWRASGItnefQL
1jb0b  (  85 )    PIAHaIwDpqfgkaavdaFtqagasnpVDiAySGVYHWWYTIGMrtngdL
                   bb                        bbb    aaaaaaa     aaaa

                           160       170       180       190       200 
1jb0a  ( 159 )    ycTAigGlvmaglMlfAGwfHYHk--rAPkleWFqnVesMLNHHLAGLLG
1jb0b  ( 135 )    yqGAifLliLAslAlfAgwlHlqpkf-rpslswFknAeSRLNHHLAGLFG
                  aaaaaaaaaaaaaaaaaaaa          aaaa  aaaaaaaaaa   a

                           210       220       230       240       250 
1jb0a  ( 207 )    LGSLAWAGHQIHVSLPINklLdagvaakdIplPHeFilnpslMaelYpkV
1jb0b  ( 184 )    VSSLAWAGHLIHVAIpESrg---------qhVgwdnflstmPHp------
                  aaaaaaaaaaaa aaaaa                                

                           260       270       280       290       300 
1jb0a  ( 257 )    dWgffspfftfnwaaYs------------------dFLtFnGgLnpvTGG
1jb0b  ( 219 )    -aGl-apfftgnwgvYaqnpdtasHvFgtaqgaGtAILTFlGGfHpqTeS
                              3333                                  

                           310       320       330       340       350 
1jb0a  ( 292 )    LwlsDTAHHHLAIAvlFIiAGHMYrtnwgiGHsLkeILeaHkgp----fT
1jb0b  ( 267 )    LwLTDMAHHHLAIAvlfIvAGHMYrTqfgiGHsIkeMMdakdffgtkveG
                    aaaaaaaaaaaaaaaaaa             aaaaaa           

                           360       370       380       390       400 
1jb0a  ( 338 )    --gaGHkgLyeVLttSWHAQLAINLAMMGSLSIIVAQHMYAMPPYPyLAt
1jb0b  ( 317 )    PfnMPHqgIyetYnnSLHFQLGWHLACLGVITSLVAQHMYSLPPYAfIaq
                          aaaaaaa aaaaaaaaaaaaaaaaaaaaaaaaa         

                           410       420       430       440       450 
1jb0a  ( 386 )    dYPTQLSLFTHHMWIGGFLVVGGAAHGAIFMVrdydpamNqnNVLdrVlr
1jb0b  ( 367 )    dhTTmAALYTHHQYIAGFLMVGAFAHGAIFLVrdYdpaqNkgNVLdrVlq
                   aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa    333   aaaaaa 

                           460       470       480       490       500 
1jb0a  ( 436 )    hrdaIisHLnWVCIFLGFhSFGLYVHNdtMrafgrpqdMFSdtgiqlqPv
1jb0b  ( 417 )    hkeaIisHLsWVSLFLGFHTLGLYVHNdVVvafgtpekqi-----liePv
                   aaaaaaaaaaaaaaaaa  aaaaaaaaaaaa   333           a

                           510       520       530       540       550 
1jb0a  ( 486 )    fAqwVqnlHt-lApg------------gtAp-----nAaatASvAFggdv
1jb0b  ( 462 )    fAQfIQAAHGkllygfdtlLSnpdsiAStAwpnygnvWlpgWldaInsg-
                  aaaaaaaa                                          

                           560       570       580       590       600 
1jb0a  ( 518 )    vavggkVAMmpIvLgTADfMVHHIHAFTIHVTVLILLkGVLfArssrlIp
1jb0b  ( 511 )    ------tnsLFltIgpGDFLVHHAIALGLHTTTLILVkgALdArgsklMp
                                 aaaaaaaaaaaaaaaaaaaaaaaaaa         

                           610       620       630       640       650 
1jb0a  ( 568 )    dKanlgFRfpcdgpgrggTcqvSGWDhVFlGLFWMYNCISVVIFHFSWKM
1jb0b  ( 555 )    dKkdfgYAfpCdgpgrggTcdiSAWDaFylAMFWMLNTIGWVTFYWHWKH
                                         aaaaaaaaaaaaaaaaaaaaaaaaaaa

                           660       670       680       690       700 
1jb0a  ( 618 )    QSdVWGtvapdgtvshitggnFaqsAITInGWlrdFLwaQAsqVigsy--
1jb0b  ( 605 )    Lgvweg-----------nvaqFnesSTyLmGWlrdYLwlnSsqLinGynp
                  aaa                  aaaa   aaaaaa  aaaa          

                           710       720       730       740       750 
1jb0a  ( 666 )    --gsalsAYGlLFlGAHFIWAFSlMFlfsgrgyWqelIesivwAHnkl--
1jb0b  ( 644 )    fgtnnlSVWawMFlFGHLVWATGfMFliswrgyWqelIetlvwaHerTpl
                        aaaaaaaaaaaaaaaaaaaaaa  aaaaaaaaaaaaaaaa    

                           760       770       780       790    
1jb0a  ( 712 )    --kvapaiqPrALsiIQGrAVGVAHYLLGGIATTWAFFLArIIsvg
1jb0b  ( 694 )    AnlvrwkdkPvALsiVQArLVGLAHFSVGYILTYAAFLIASTaakf
                                aaaaaaaaaaaaaaaaaaaaaaaaaaaaa   


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