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Align your sequence(s)

Proteasome A-type and B-type

class : alpha plus beta number of structures : 17 average size : 223 average PID : 22 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1ryp rasmol 1 B 250 B proteasome component Y7 Saccharomyces cerevisiae 1.9 28.6
1pma rasmol 13 A 233 A proteasome alpha subunit Thermoplasma acidophilum 3.4 22.1
1ryp rasmol 4 G 247 G proteasome component C1 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 9 E 250 E proteasome component PUP2 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 2 F 234 F proteasome component PRE5 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 2 C 245 C proteasome component Y13 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 3 D 243 D proteasome component PRE6 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 10 A 252 A proteasome component C7-alpha Saccharomyces cerevisiae 1.9 28.6
1pma rasmol 1 1 203 1 proteasome beta subunit Thermoplasma acidophilum 3.4 22.1
1ryp rasmol -9 H 196 H proteasome component PRE3 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 1 L 212 L proteasome component PRE2 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol 1 I 222 I proteasome component PUP1 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol -1 K 197 K proteasome component C11 Saccharomyces cerevisiae 1.9 28.6
1ned rasmol 1 A 187 A heat shock protein HslV Escherichia coli 3.8 25.6
1ryp rasmol -9 1 213 1 proteasome component C5 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol -8 J 196 J proteasome component PUP3 Saccharomyces cerevisiae 1.9 28.6
1ryp rasmol -8 2 225 2 proteasome component PRE4 Saccharomyces cerevisiae 1.9 28.6
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : proteasome  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1rypb  (   1 )    mtdrysfslTtfspsgklgqidyaltaVkqg-vTSLGIkAtnGVVIATek
1pmaa  (  13 )             tvfspdgrlfqVeyareavkkg-sTALGMkFanGVLLISDk
1rypg  (   4 )    gt-gydlsNsvfSpdgrnfqveyavkaVeng-tTSIGIkCndGVVFAVEk
1rype  (   9 )         drgvstfspegrlfqVeysleaiklg-STAIGIaTkeGVVLGVEK
1rypf  (   2 )    frnnydgdTvtfSptgrlfqVeyaleaIkqg-sVTVGLrSnthAVLVAlk
1rypc  (   2 )    gsrrydsrttifspegrlyqVeyalesIshA-gTAIGImAsdGIVLAAeR
1rypd  (   3 )       gydralSifspdghifqveyaleaVkrg-TCAVGVkGknCVVLGCEr
1rypa  (  10 )      agydrhiTifSpegrlyqveyafkaTnqtnINSLAVrGkdCTVVISqk
1pma1  (   1 )                                    tTTVGItLkdaVIMATEr
1ryph  (  -9 )                           lkkgevsLgASIMAVtFkdGVILGADS
1rypl  (   1 )                                    tTTLAFrFqgGIIVAVDS
1rypi  (   1 )                                    tTIVGVkFnnGVVIAADT
1rypk  (  -1 )                                   mdIILGIrVqdSVILASSk
1neda  (   1 )                                    tTIVSVrrnghVVIAGDG
1ryp1  (  -9 )                           qfnpygdnGGTILGIAGedFAVLAGDT
1rypj  (  -8 )                           sd-pssinGGIVVAMtGkdCVAIACDl
1ryp2  (  -8 )                            tqqpivtGtSVISMkYdnGVIIAADn
                                                    bbbbb   bbbbbbb 

                           60        70        80        90        100 
1rypb  (  50 )    ksss--plam-setls-kVslLT-pdIGAVySGmgpdYrvLvdkSrkvAh
1pmaa  (  53 )    kvrs--rlie-qnsie-kIqlId-dyVAAVtsGlvadArvLvdfAriSAq
1rypg  (  52 )    lits--kllv-pqknv-kIqvVd-rhIGCVYSGlipdGrhLVnrGreeAa
1rype  (  53 )    rats--plle-sdsie-kIVeId-rhIGCAMSGltadArsMIehArtaAv
1rypf  (  51 )    rnad--elss----yqkKIikCd-ehMGLSLAGlapDArvLSnyLrqqCn
1rypc  (  51 )    kvts--tlle-qdtsteKLykLn-dkIaVAVAGltadAeiLIntArihAq
1rypd  (  49 )    rstl--klqd-tritpskVskId-shVVLSFSGlnadSriLiekArveAq
1rypa  (  58 )    kvpd--klld-pttvs-yIfcIs-rtIGMVVNGpipdArnAAlrAkaeAa
1pma1  (  19 )    rvtmenfimh-k--ngkkLfqId-tyTGMTiAglvgdAqvLvryMkaeLe
1ryph  (  19 )    rTttgayian-r--vtdKLtrVh-dkIwCCRsgSaadTqaIAdiVqyhLe
1rypl  (  19 )    ratagnwvas-q--tvkrVieIn-pfLLGTMAggaadCqfwEtwLGsqCr
1rypi  (  19 )    rstqgpivad-k--ncakLhrIs-pkIwCAGagtaadTeaVTqlIgsnIe
1rypk  (  19 )    avtrgisvlk-d--sddKTrqLs-phTLMSFAgeagdtvqFAeyIqanIq
1neda  (  19 )    qatlgntvmkg---nvkKVrrLyndkVIAGFaggtadAftLFelFerkLe
1ryp1  (  19 )    RnItdysins-r--yepkVfdCg-dnIVMSANgfaadGdaLVkrFknsVk
1rypj  (  19 )    RlGsqslgvs-n--kfeKIfhyg--hVFLGITglatdVttLnemFrykTn
1ryp2  (  19 )    LGSygsllrf-n--gveRLipVg-dnTVVGIsgDisdMqhIerlLkdlvt
                                    bbbb    bbbbbbb aaaaaaaaaaaaaaaa

                           110       120       130       140       150 
1rypb  (  95 )    tsykriyg-----eyPpTklLVseVAkiMqeatq------sgGvrPfGVS
1pmaa  (  98 )    q-ekvtyg-----slvnIenLVkrVAdqMqqytqygg------vrPygVS
1rypg  (  97 )    s-fkklyk-----tpIpIpaFAdrLGqyVqahtlyn------svrPFGVS
1rype  (  98 )    t-hnlyyd-----edinVesLTqsVCdlAlrFGegasgeerlmsrPfgVA
1rypf  (  94 )    y-sslvfn-----rkLaVerAGhlLcdkAqkntqsy------ggrPygVG
1rypc  (  97 )    n-ylktyn-----edIpVeiLVrrLSdiKqgytq----hggl--rPfgVS
1rypd  (  95 )    s-hrltle-----dpVtVeyLTryVAgVQqrytq------sgGvrPFGVS
1rypa  ( 103 )    e-frykyg-----ydMpCdvLAkrMAnlsqiytqra------ymrPlgVi
1pma1  (  65 )    l-yrlqr-r----vnMpIeaVAtlLsnmLnqvky----------mpymVq
1ryph  (  65 )    l-ytsqy------gtPsTetAAsvFkelCyenkd----------n-ltAg
1rypl  (  65 )    l-helre-k----erIsVaaASkiLSnlVyqykg----------aglsMg
1rypi  (  65 )    l-hslyt-s----reprVvsAlqmLkqhLfkyqGh-----------igAy
1rypk  (  65 )    l-ysire-d----yelsPqaVSsfVrqeLaksirsr--------rpyqVn
1neda  (  65 )    mhq------------ghLvkAAveLAkdWrtd---------rmlrkleal
1ryp1  (  65 )    w-yhfdhnd----kkLsInsAArnIqhlLygkrf----------fpYyVh
1rypj  (  64 )    l-yklke-e----raIePetFTqlVssSLyerrf----------gpyfVg
1ryp2  (  65 )    e-naydnpladaeealePsyIFeyLatvMyqrrskm--------npLwNa
                  a aaaaa          aaaaaaaaaaaaaa                 bb

                           160       170       180       190       200 
1rypb  ( 134 )    LLIAGhdefn-gfsLyqVdPsGsyfpw-k-ATAIGkgsvaAktfLekrwn
1pmaa  ( 136 )    LIFAGidqi--gprLFdCdPaGtiney-k-ATAiGsgkdaVvsfLereyk
1rypg  ( 135 )    TIFGGvdkn--gAhLyMLePsGsywgy-k-GAATGkGrqsAkaeLeklvd
1rype  ( 142 )    LLIAGhdadd-gyQLFhAePsgtfyry-n-AkAIGsgsegAqaeLlnewh
1rypf  ( 132 )    LLIIGydk-s-gAhLLeFqPsGnVtel-y-GTAIGarsqgAktyLertld
1rypc  ( 135 )    FIYAGyddry-gyqLytSnPsGnytgw-k-aiSvGantsaAqtlLqmdyk
1rypd  ( 133 )    TLIAGFdprddePkLyqTePsGiyssw-s-AQTIGrnsktVrefLeknyd
1rypa  ( 141 )    lTFVSvdeel-gpSIykTdPaGyyvgy-k-AtATGpkqqeIttnLenhfk
1pma1  (  99 )    LLVGGIdt---aphVFsIdaaGgsved-i-yASTgsGspfVygvLesqys
1ryph  (  97 )    IIVAGyddkn-kGeVytIplgGsvhkl-p-yAiagsGstfIygyCdknfr
1rypl  (  99 )    TMICGyTrke-gpTIyyVdsdGtrlkg-d-ifCvgsGqtfAygvLdsnyk
1rypi  (  98 )    LIVAGVDpt--gshLfSIhAhGstdvg-y-ylSlgsGslaAmavLeshwk
1rypk  ( 101 )    VLIGGYdkkknkPeLYqIdylGtkvel-p-yGAHgySgfyTfslLdhhyr
1neda  (  99 )    LAVADe------taSLiItGngdvvqpendLIAigsGGpyAqaaAralle
1ryp1  ( 100 )    TIIAGlde-dgkGAVysFdpvGsyere-q-CrAGgaAaslImpfLdnqVn
1rypj  (  98 )    PVVAGInsksgkpFIAgFdliGcidea-kdFIVsgtAsdqLfgmCeslye
1ryp2  ( 106 )    IIVAGVqs-ngdqfLryVnllGvtyss-p-TLATgfGahmAnplLrkvVd
                  bbbbbb      bbbbbb     bbb    bbbb   aaaaaaaaaaa  

                           210       220       230       240       250 
1rypb  ( 181 )    --d---------------ele--ledAIhIALlTLkesV-eg-efnGdt-
1pmaa  ( 182 )    --e---------------nlp--ekeAVtlGikALksSleegeeLk----
1rypg  ( 181 )    hhp---------------egl-sAreAVkqAAkIIylAhednk---ekdf
1rype  ( 189 )    --s---------------sLt--lkeAEllVLkILkqvM-ee-kLdenn-
1rypf  ( 178 )    tFi---------------kidgnpdeLIkaGVeAIsqSl-rdesLtvdN-
1rypc  ( 182 )    --d---------------dMk--VddAieLALkTLsktT-dssaLtydr-
1rypd  ( 181 )    r-k---------------eppatveeCVklTVrSLlevVq----tgakn-
1rypa  ( 188 )    ksk------------idhIneeswekVVefAIthMidaLg--teFsknd-
1pma1  ( 144 )    e-----------------kmt--vdeGVdLVIrAIsaAKqrdsaSGg---
1ryph  ( 144 )    e-----------------nMs--keeTvdFIkhSLsqAikwdgsSGg---
1rypl  ( 146 )    w-----------------dls--vedAlylGkrSILaAAhrdaySgg---
1rypi  ( 144 )    q-----------------dLt--keeAikLASdAIqaGIwndlgSGs---
1rypk  ( 149 )    p-----------------dmt--teeGLdLLklCvqeLekrmpmdfk---
1neda  ( 144 )    ----------------ntel-----sAreIAekALdiAGdiciyTnh---
1ryp1  ( 147 )    fknqyepgtngkvkkplkyls--veeViklVrdSFtsATerhiqVGD---
1rypj  ( 147 )    p-----------------nle--pedLfetIsqALlnAAdrdalSGw---
1ryp2  ( 153 )    r------------esdIpkTt--vqvAeeaIvnAMrvLyyrDarSsr---
                                         aaaaaaaaaaaaaaaa           

                           260       270       280       290       300 
1rypb  ( 209 )    -IELAiIGde---------npdllgytgiptdkGprfrkLtsqeIndrle
1pmaa  ( 209 )    aPeIASItvg------------------------nkYriYdqeevkkfl 
1rypg  ( 212 )    eLeISWCSl---------------------seTnglHkfVkgdllqeAid
1rype  ( 217 )    -AqLScItkq------------------------dGFkiYdnekTaelik
1rypf  ( 211 )    -LSIAIVGk------------------------dtpFtiydgeaVakYi 
1rypc  ( 211 )    -LeFATIrkg---------an----------dgeVyQkifkpqeIkdiLv
1rypd  ( 210 )    -IeItVVkpd------------------------sdIvalsseeInqyvt
1rypa  ( 223 )    -LeVGVAtk-------------------------dkFftLsaenIeerlv
1pma1  ( 172 )    mIdVAvItrkdgYvqlp----tdqIesrirklglil              
1ryph  ( 172 )    vIrMVVLta-agverlify--pdeYeql                      
1rypl  ( 174 )    sVnLYHVte-dgwiyhgnhdvgelfwkvkeeegsfnnvi-----g     
1rypi  ( 172 )    nVDVCVMeigkdAeylrnyl---tpnvreekqksykfpr-----gttavl
1rypk  ( 177 )    gViVkIVdk-dgIrqvd------dFqaq                      
1neda  ( 172 )    fhtieelsykaefhh-----------------------------------
1ryp1  ( 192 )    GLeILIVtk-dgVrkefyeLkrd                           
1rypj  ( 175 )    gAVVyIIkk-devvkrylk-----mrqd                      
1ryp2  ( 186 )    nFSLAiIdkntgltfkknlqVe--------------nmk-----wdfakd
                   bbbbbbb                                          

                           
1rypb  ( 249 )    al       
1pmaa                      
1rypg  ( 241 )    fAqkein  
1rype  ( 242 )    eLkekeaae
1rypf                      
1rypc  ( 241 )    ktgit    
1rypd  ( 235 )    qieqekqeq
1rypa  ( 247 )    aiaeqd   
1pma1                      
1ryph                      
1rypl                      
1rypi  ( 214 )    kesivnicd
1rypk                      
1neda  ( 187 )    --------h
1ryp1                      
1rypj                      
1ryp2  ( 217 )    ikgygtqki
                           


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