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Align your sequence(s)

Helicase

class : alpha beta number of structures : 3 average size : 482 average PID : 32 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1d9x rasmol 2 A 595 A deoxyribonucleic acid repair protein UvrB Bacillus caldotenax 2.60 25.6
1c4o rasmol 2 A 583 A excinuclease ABC subunit B Thermus aquaticus 1.50 25.2
1hv8 rasmol 3 A 365 A probable ATP-dependent RNA helicase mj0669 Methanococcus jannaschii 3.00 27
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : DEAD  helicase_C  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1d9xa  (   2 )    egrFqlvApyepqGdqpqAiakLVdGLrr-gvkhQTLlGAtgTgktFTiS
1c4oa  (   2 )      tFrYrgp-spkGdQpkAiagLveALrd-gerfVTLlGAtgTgktvTMA
1hv8a  (   3 )             veynFneLnLsdnIlnaIrnkGfekPtdIQ----kVIplFL
                                      aaaaaaaa                 aaaaa

                           60        70        80        90        100 
1d9xa  (  51 )    nVIaqvnkPTLVIAhn-ktlAgqlyseLkefF-phNaVeyFVsyydyyqp
1c4oa  (  48 )    kVIeaLgrPALVLAPn-kilAaqLAaeFrelF-peNaVeyFiSyydyyqp
1hv8a  (  42 )    n--de--ynIVAqArtgsgKTASFAIPLIelVnenngIEAIILTPt----
                  a        bbbb      aaaaaaaaaaaa        b          

                           110       120       130       140       150 
1d9xa  (  99 )    eaYvpqtdtyiekdakindeidklrHsATsaLferrDVIIVASVSCIygL
1c4oa  (  96 )    eaYvpgkdlyiekdasinpeierlrhsTTrsLltrrdVIVVAsVsAIyGL
1hv8a  (  84 )    ------------------relAiqVAdeIesLkg----------------
                                     aaaaaaaaaaaa                   

                           160       170       180       190       200 
1d9xa  ( 149 )    gspeeYrelvVslrvgmeiernallrrlvdIqydrndifrgtfrvrgdvv
1c4oa  ( 146 )    gdpreYrarnlvg-------------------------------------
1hv8a  ( 100 )    --------------------------------------------------
                                                                    

                           210       220       230       240       250 
1d9xa  ( 200 )    eifpasrdehcirveffgdeieaEvdaltgkvlgerehvaIFPashfvtr
1c4oa  ( 237 )    --------------------------------------fvlfpatHylsp
1hv8a  ( 100 )    --------------------------------nknLkIAkIygg------
                                                                    

                           260       270       280       290       300 
1d9xa  ( 253 )    eekmrlAIqnIeqeLeerLaelraqgklleAqrLeqrTryDLemMremgf
1c4oa  ( 249 )    e-gleeILkeIekeLwerVryFeergevlyAqrLkerTlydLemLrvmgt
1hv8a  ( 112 )    -----------------------------------kaiypqikaLknANI
                                                       aaaaaaaaa    

                           310       320       330       340       350 
1d9xa  ( 303 )    CsGienYsrhLalrppgstpyTLLdYFpddFLIIVdeShvTLpqLrgmyn
1c4oa  ( 298 )    CpGvenYaryFtgkapgeppyTLLdYFpedFLVFLdeShvTVpqLqgmyr
1hv8a  ( 127 )    VVGtPgrIldhinr--g---tLnLknV---kyFILDeAdelngfikdVek
                         aaaa                    bbbbb        aaaaaa

                           360       370       380       390       400 
1d9xa  ( 353 )    gdrarkqvLvdhGfRLpSAldnrPLtFeeFeqkInqIIYVSaTPgpyEle
1c4oa  ( 348 )    gdyarkktLVdyGFrLpSAldNRPLrfeeFlerVsqVVFVSaTPGpfEla
1hv8a  ( 171 )    ILnaCnk--------------------------dkrILLFSatp-reIln
                  aaa                                 bbbb     aaaaa

                           410       420       430       440       450 
1d9xa  ( 403 )    hSp---gvveQIiRptgLldPtIdvrptkgqiddLigeIrervernerTL
1c4oa  ( 398 )    hSg---rvveQIiRptgllDPlVrvkptenqildLMegIreraargErTL
1hv8a  ( 195 )    LAkkygdysfikakinanIeQsYvevnenerfeaLcrlLknk---efYGL
                  a       bbb          bbbb     aaaaaaaaa         bb

                           460       470       480       490       500 
1d9xa  ( 450 )    VTTltkkmAedLtdyLkeagIkVAylhseiktlerieiirdLrlgkydVL
1c4oa  ( 445 )    VTVltvrmAeeltsfLvehgIrAryLhheldAfkrqalIrdLrlghYdCL
1hv8a  ( 243 )    VFCktkrdTkeLas-LrdigFkAgaIHgdlsqsqrekvIrlFkqkkirIL
                  bb     aaaaaa                      aaaaaaa      bb

                           510       520       530       540       550 
1d9xa  ( 500 )    VGinLlregLdIPeVSLVAILdADkegflRserSLiqTIgrAArna-nGh
1c4oa  ( 495 )    VGinLlregLdIpeVSLVAILdAdkegflRserSLIqTIgrAArNa-rGe
1hv8a  ( 293 )    IAtdvSrgidvn-dLncVINyhLPq-----npesY-hRIgrTgragkkGk
                  bb              bbbb                             b

                           560       570       580       590      
1d9xa  ( 549 )    VIMYA-dtitksMeiAiqeTkrRraiQeeynrkhgivprtvkkeirdv
1c4oa  ( 544 )    VWLYA-drvseaMqrAieeTnrRralQeaynlehgitpetv       
1hv8a  ( 338 )    AISIINrreykkLryIerakLkIkklk                     
                  bbbb      aaaaaaaa                              


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