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Align your sequence(s)

glycosyl hydrolase family 1

class : alpha beta barrel number of structures : 8 average size : 445 average PID : 38 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1cbg rasmol 1 - 490 - cyanogenic beta-glucosidase Trifolium repens 2.15 19.50
1e73 rasmol 3 M 333 M myrosinase Sinapis alba 1.50 13.40
1hxj rasmol 6 A 495 A beta-glucosidase Zea mays 2.05 16.80
1ug6 rasmol 4 A 429 A beta-glycosidase Thermus thermophilus 0.99 12.10
1gnx rasmol 15 A 477 A beta-glucosidase Streptomyces sp. 1.68 19.00
1e4i rasmol 2 A 448 A beta-glucosidase Bacillus polymyxa 2.00 21.00
1qox rasmol 2 A 450 A beta-glucosidase Bacillus circulans 2.70 25.50
1qvb rasmol 1 A 481 A beta-glycosidase Thermosphaera aggregans 2.40 21.00
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Glyco_hydro_1  
CAZy : GH_1  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1cbg   (   1 )       fkplpisfddfsd-LnrscFapgFvFGTASSAfQYeGaAfedgkgpS
1e73m  (   3 )    eitcqenlpftcgntdalnsssfssdfifgvasSAyqiEGti---gRglN
1hxja  (   6 )       qmlsp-----sei-PqrdwFpsdFtFGAATSAyQIEGawnedgKgeS
1ug6a  (   4 )                   nae-------kflwGVATSAYQIEGAtqedgRgpS
1gnxa  (  15 )                    alt---FpegFlWGSATASYQIEGAAaedgRtpS
1e4ia  (   2 )                   tifq---FpqdFMWGTATAAYQiEGayqedgRglS
1qoxa  (   2 )                   sihm---FpsdFkWGVATAAYQIEGaynedgRgmS
1qvba  (   1 )                        mkFpkdFMIGYSsSPfQFEaGipgSedpnS
                                             bbbbb  aaaa            

                           60        70        80        90        100 
1cbg   (  47 )    iWdtFThkyp----ekIkdrtnGdvAIdEyhrykeDIgiMkdMnLdAYRF
1e73m  (  50 )    IwDgFThrypn---kSgpdhgngdttcdSfsywqkdIdvLdelnAtGYrF
1hxja  (  47 )    NWDhFChnhp----erIldgsnSdiGAnSYhmyktDVrlLkeMgMdAYRF
1ug6a  (  32 )    IWdaFAq-rp----gaIrdgstGepACdHYrryeeDIalMqsLgVrAYRF
1gnxa  (  46 )    IWDtYAr-tp----grVrngdtGdvATdHyhrwreDValMaeLgLgAYRF
1e4ia  (  34 )    IWDtFAh-tp----gkVfngdnGnvACdSYhryeeDIrlMkeLgIrTYRF
1qoxa  (  34 )    IWDtFAh-tp----gkVkngdnGnvACdSYhrVeeDVqlLkdLgVkVYRF
1qvba  (  31 )    DWwvWVhdpeNtaaglVS-gdfPenGPGywnlnqnDHdlAekLgVnTIRV
                  aaaaaa                      aaaaaaaaaaaaaa    bbbb

                           110       120       130       140       150 
1cbg   (  93 )    SISWPRVLpkGklsg---------------------------gvnreGin
1e73m  (  97 )    SIAWSRIIprGkrsr---------------------------gvnekGId
1hxja  (  93 )    SISWPRILpkGtkeg---------------------------ginpdGik
1ug6a  (  77 )    SVAWPRIlPeGrg-----------------------------rinpkGla
1gnxa  (  91 )    SLAWPRIQptGrg-----------------------------palqkGLd
1e4ia  (  79 )    SVSWPRIFpnGdg-----------------------------evnqkGLd
1qoxa  (  79 )    SISWPRVLpqGtg-----------------------------evnraGLd
1qvba  (  80 )    GVEWSrIFpkpTfnvkVpverdengSIvhVdVddkaVerLdelAnkeAVn
                  b  aaaa                                      aaaaa

                           160       170       180       190       200 
1cbg   ( 116 )    YYnnLIneVlangMqPYVTLFHwDVPqaLed--ey---------rGFlgr
1e73m  ( 120 )    yYhgLIsgLikkgItPfVTLFhwDLPqtLQd--ey---------eGFldp
1hxja  ( 116 )    yYrnLInlLlengIePYVTIFHWDVPqaLee--ky---------gGFlDk
1ug6a  (  98 )    fYdrLVdrLlasgItPFLTLYHWDLPlalee--r----------gGWrsr
1gnxa  ( 112 )    FYrrLAdeLlakgIqPVATLYHWDLPqeLen--a----------gGWPer
1e4ia  ( 100 )    YYhrVVdlLndngIePFCTLYHWDLPqalqd--a----------gGWgnr
1qoxa  ( 100 )    YYhrLVdeLlangIePFCTLYHWDLPqaLqd--q----------gGWgsr
1qvba  ( 130 )    hYveMYkdWvergrkLILNLYHwPLPlwLHnPimVrrmgpdrApsGWLne
                  aaaaaaaaaaa   bbbbbbb     aaaa               333  

                           210       220       230       240       250 
1cbg   ( 155 )    ---nIvddFrdYAelCFkeFGdrVkhWITLNePwGvSmnAYAyGt--fAp
1e73m  ( 159 )    ---qIiddFkdYAdLCFeeFGdsVkyWLTINqLySvPtrGYgsAl--dAP
1hxja  ( 155 )    shksIvedYtyFAkVCFdnFgdkVknWLTFNePqtFTSfSYGtGv--FAp
1ug6a  ( 136 )    ---eTAfAFaeYAeaVAraLAdrVpfFATLNEPwCsAFlGHwtGe--HAP
1gnxa  ( 150 )    ---aTAerFaeYAaiAAdaLgdrVkTWTTLNePwcsAFlGYGsGv--hAp
1e4ia  ( 138 )    ---rTIqaFVqFAetMFreFhgkIqhWLTFNEPwcIAFlSNmlgv--hAp
1qoxa  ( 138 )    ---iTIdAFaeYAelMFkeLGgkIkQWITFNePwcMAFlSNylGv--hAp
1qvba  ( 180 )    ---eSVVEFAKYAAYIAwkMgelPvmWSTMNePNvvYeqGYmfvkgGfPP
                     aaaaaaaaaaaaaaaaa     bbbbbb aaaaaaaaa         

                           260       270       280       290       300 
1cbg   ( 200 )    GSdwlklnÇtgGdSGrePYlAAHyQLLAHAAAArlYktkyqasqnGiI
1e73m  ( 204 )    GsptvdpsÇyaGnsstepyiVAhhQLlAHAkVVdlYrknyt-hQgGkI
1hxja  ( 203 )    GrÇspgldÇAyptgnSlvePYtAGHNILLAHAeAVdlYnkhykrd-dTrI
1ug6a  ( 181 )    Glr------------nleAALrAAHHLLLGHGlAVeaLraagA----rrV
1gnxa  ( 195 )    Grt------------dpvaALrAAHHLNLGHGlAVqaLrdrLp--adAqC
1e4ia  ( 183 )    Glt------------nlqtAIdVGHHLLVAHGlSVrrFrelgT---sgqI
1qoxa  ( 183 )    Gnk------------dLqlAIdVSHHLLVAHGrAVtlFrelgi---sgeI
1qvba  ( 227 )    gyl------------sleaAdkArrNMIQAHARAydNIkrfsk----kpV
                                    aaaaaaaaaaaaaaaaaaaaaa        bb

                           310       320       330       340       350 
1cbg   ( 250 )    GITLvShwfepas-kekadvdAakrgLdfMLGWFMhPLtkGrYPesMryl
1e73m  ( 253 )    GPTMitrwflpyndtdrhsiaatermkefFlgWFmgPLtnGtYpqiMidt
1hxja  ( 252 )    GLAFdVmGRvpyg-tsfldkqAeerSwdiNLGWFLePVvrGdYPfsMrsl
1ug6a  ( 215 )    GIVLnFapAyge------dpeAvdvAdrYhNrfFLDPILgkgyPesPFr-
1gnxa  ( 231 )    SVTLnIhhVrplt-dsdadadAvrrIdALAnrVFTgPMlqgaYpedLvkd
1e4ia  ( 218 )    GIAPnVswAvpys-tseeDkaACaRtiSLhSDWFLqPIyqgsYPqfLvdw
1qoxa  ( 218 )    GIAPnTswAvpyr-rtkeDmeAClrvNGwSGDWYLDPIyfgeYPkfMldw
1qvba  ( 261 )    GLIYaFqwFelle-g---paevfdkfksskLYyFTDiVskGssiinv---
                  bbbbb   bb      aaaaaaaaaaaaaa aaaaaaaaa    aaaaaa

                           360       370       380       390       400 
1cbg   ( 299 )    Vrk--rLpkFsteeskeLtgSfdFLGLNYySSyyAakapripnarp-AIq
1e73m  ( 303 )    Vge--rLpsFspeesnlVkgSydflglnyyftq                 
1hxja  ( 301 )    Are--rLpfFkdeqkekLagSynMLGLNYyTSrfSknidispnyspvlNt
1ug6a  ( 258 )    ---dpppvpilsrDlelVarpLdFLGVNYyaPvrVapgt-----------
1gnxa  ( 280 )    TagltdWsFvrdgDlrlAhQkLdfLGVNYysPtlVsa-h-------spwP
1e4ia  ( 267 )    FaeqgAtVpiqdgDmdiIgepIdMIGINYysMsvNrfnp---------ea
1qoxa  ( 267 )    YenlgykPpivdgDmelIhqpIdFIGINYytSsmnrynp-------geaG
1qvba  ( 304 )    ------------eyrrdLAnrLdWLGVNYySrlvYkivd---dkPiilhg
                               aaaaa     bbbbb    bbbb              

                           410       420       430       440       450 
1cbg   ( 346 )    tdslinatfeh-ngkpLgpmAAsswLCIyPqGIrkLLlyVknhYnnpvIy
1e73m                                                               
1hxja  ( 349 )    dDAyAsqevnGpdgkpIgppMgNpwIymypeGLkdLLmiMknkygnppIY
1ug6a  ( 294 )    gtlpVrylp------pegpaTaMg-wEvypeGLyhLLkrLgreV-pwpLY
1gnxa  ( 338 )    gAdrVafhq------ppgetTaMg-wAvdpsGLyeLLrrLssdfpalpLv
1e4ia  ( 308 )    gflqSeein------mglpvTdIg-wpvesrGLyeVLhyLq-kYgnidIY
1qoxa  ( 310 )    gmlsSeais------mgapkTdig-weiyAeGLydLLryTAdkYgnptLY
1qvba  ( 339 )    yGflCtpggiSpa---enpCSdfG-wEVypeGLylLLkeLynrYg-vdLI
                       bb                       aaaaaaaaaaaa      bb

                           460       470       480       490       500 
1cbg   ( 395 )    ITENGrNefndp--tlslqeslldtpRidYYyrHLyyVlTAigdgVnVkG
1e73m                                                               
1hxja  ( 399 )    ITENGIGdvdtketplpmeaAlnDykRlDYIqrHIaTLkeSidlgSnVqG
1ug6a  ( 336 )    VTENGAAypDl----wtgeavVedpeRvaYLeaHVeAAlrAreegvdLrG
1gnxa  ( 381 )    ITENGAAfhDy----adpegnVnDpeRiaYVrdHLaaVhrAikdgSdVrG
1e4ia  ( 350 )    ITENgACInde----vvn-gkVqDdrRisYMqqHLvqVhrTihdglhVkG
1qoxa  ( 353 )    ITENGACYndg----lsldgrIhDqrRidYLAmHLiqASrAiedgInLkG
1qvba  ( 384 )    VTENGVSDs-------------rDalRpAYLVSHVySVwkAanegipVkG
                  bbb                     aaaaaaaaaaaaaaaaaaa    bbb

                           510       520       530       540       550 
1cbg   ( 443 )    YFAWSLFDNMeWdsGytVrFGLVfVdfknnlkRhpKlSAhwFksFLk---
1e73m                                                               
1hxja  ( 449 )    YFAWSLLDNFewfaGfteRYGIVYVdrnnnCtRymKeSAkwLkeFNt   
1ug6a  ( 382 )    YFVWSLMDNFEWafGytrrFGLYYVdfps-qrRIpKrSAlwYreriara 
1gnxa  ( 427 )    YFLWSLLDNFeWahGyskrFGAVyVdypt-gtRipKaSArwYaeVArtgv
1e4ia  ( 395 )    YMAWSLLDNFEWaeGynmrFGMIHVdfrt-qvRtpKqSYywYrnVVsnnw
1qoxa  ( 399 )    YMEWSLMDNFeWaeGygmrFGLVHVdydt-lvRtpKdSFywYkgVIsrgw
1qvba  ( 421 )    YLHWSLTDNYeWaqGfrQkFGLVmVdfkt-kkrylrpSAlvFreIAthnG
                  bbbb       333        bbb       bbb aaaaaaaaaa    

                           560 
1cbg   ( 490 )    ----k       
1e73m                         
1hxja                         
1ug6a                         
1gnxa  ( 476 )    Lp          
1e4ia  ( 444 )    Letrr       
1qoxa  ( 448 )    Ldl         
1qvba  ( 470 )    IPdelqhltliq
                              


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