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Align your sequence(s)

plant virus coat protein

class : all beta number of structures : 7 average size : 175 average PID : 13 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
2tbv rasmol 102 A 273 A coat protein Tomato bushy stunt virus 2.90 N/A
4sbv rasmol 62 A 260 A coat protein Southern bean mosaic virus 2.80 25.40
1smv rasmol 65 A 260 A coat protein Sesbania mosaic virus 3.0 22.7
1stm rasmol 17 A 157 A coat protein Satellite panicum mosaic virus 1.9 21
1bmv rasmol 1001 1 1185 1 coat protein Bean-pod mottle virus 3.0 33
1cwp rasmol 42 A 190 A coat protein Cowpea chlorotic mottle virus 3.2 31
2stv rasmol 12 - 195 - coat protein Satellite tobacco necrosis virus 1 2.50 N/A
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Satellite_CP  Bromo_CP  Como_SCP  Viral_coat  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
2tbva  ( 102 )               gvtvtshrEyLtqvnNssgfvvnggivgnslqLNPsng-
4sbva  (  62 )            ssmdvtilshcelStelaVtvtivvt------selVMPf---
1smva  (  65 )               gaitvlhcelTaeigvtdsivvs------selVMPy---
1stma  (  17 )               aaatslvyDt-cyvtLtera---------ttsFqRq---
1bmv1  (1001 )               sisqqtvwnqMAtVrTPlnFdsskqsfCqFsVdLLgggI
1cwpa  (  42 )           kaikawtgysvskwtasCaaaeak------vTsaitIsLp---
2stv   (  12 )    tmravkrminthlehkrfalinsgntNat--------aGtVqnLSngIi-
                                 bbbbbbbbbbb              bbb       

                           60        70        80        90        100 
2tbva  ( 140 )    ---tLF--------swLpalAsnfdqYsFnsVvLdYvplcgt---tevgr
4sbva  (  95 )    ---tVg--------twLrgvAqnwskYaWvaIrYTYlpsCpt---ttsga
1smva  (  95 )    ---tVg--------twLrgvAdnwskYSWlsVrYTYipsCps---staGs
1stma  (  43 )    ----sF--------ptLkgm----gdraFqVvaFtIqGvSa-----apLm
1bmv1  (1040 )    svdktgdWitlvqnspISnlLrvAawKkgcLmVkVvMsGnaavkrsdWaS
1cwpa  (  76 )    --------------neLssernk--qlkVGrVlLwLgll--p---svsgt
2stv   (  53 )    ---qgd-----------dinqRsgdqVrIvsHkLhVrGtAit----vsQt
                                            bbbbbbbbbbbb            

                           110       120       130       140       150 
2tbva  ( 176 )    VALYFdkdSqd--pePa--------dr-----veLan---fgvlketaPw
4sbva  ( 131 )    IhMGFqydMad--tlPv--------sv-----nqLsn---lkgyvtgpVw
1smva  ( 131 )    IhMGFqydMad--tvPv--------sv-----nkLsn---lrgyvsgqVw
1stma  (  72 )    YnArLynp-gd--t--------------------------dsvhaTgvql
1bmv1  (1090 )    lVqVfltnsnst--------------------------------------
1cwpa  ( 105 )    VkSCVtetqt--------------------taaaSfq--vAlavAdnskd
2stv   (  85 )    FrFIWFrDnmNrGttPtvleVLntanfmsqynpiTlqqkrFtilkdVtLn
                  bbbbbb                            a               

                           160       170       180       190       200 
2tbva  ( 208 )    a------------------eamlrIpTdk---vkryCnds----atv---
4sbva  ( 163 )    eGqsGlÇfvnntkçpdtsrAITIaLdtnevsekrYpFktatdyatavgvn
1smva  ( 163 )    sGsaGlçfinnsrçsdtstAISTtLdvseLgkkwYpYktsadyatavgvd
1stma  (  93 )    Mgt---------------vprtvrLtPrvgqnnwFfGnTe----------
1bmv1  (1102 )    -----ehfdacrwtksephsWeliFpIeVcGpnngfemwsse--------
1cwpa  ( 133 )    -------------------vvaAmYp-----------------eafkgit
2stv   ( 135 )    Cslt------------gesikdriinlp---gqlVnYngatav-------
                                       bbb                          

                           210       220       230       240       250 
2tbva  ( 230 )    --dqkliDLGQLGIATygGag--a---daVGeLfLaRs--VtLyfpqptn
4sbva  ( 213 )    aniGnilVPArLVTAMegGsskta---vnTGrLyAsYt--IrLiepiaaa
1smva  ( 213 )    vniAtdlvPArLVIAlldGsssta---vaAGrIyDtYt--IqMieptasa
1stma  ( 118 )    ------eaetILAIdGlv-stkganApsNtViVtGcFr--Lapse-----
1bmv1  (1139 )    ---wanQtSwhLsFlVdnPk------qSttFdVlLgisqnFeiagntlmp
1cwpa  ( 147 )    LeqLaad--LtIYLyssa------aLtegdViVhLeVE--Hv--rptfdd
2stv   ( 163 )    -aaSNGpGAIFMLQIGdsl--------vGlWdSsYeAv--YTDa      
                            bbbbbbb           bbbbbbbbbb  bb        

                        
2tbva  ( 271 )    tll   
4sbva  ( 258 )    lnl   
1smva  ( 258 )    lnl   
1stma  ( 154 )    --lqss
1bmv1  (1180 )    afsvpq
1cwpa  ( 185 )    sftpvy
2stv                    
                        


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