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Align your sequence(s)

Sec1 family

class : multi domain number of structures : 2 average size : 541 average PID : 68 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1epu rasmol 2 A 591 A neuronal Sec1 Loligo pealei 2.40 24
1dn1 rasmol 4 A 592 A syntaxin binding protein 1 Rattus norvegicus 2.60 23.9
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Sec1  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1epua  (   2 )     aLktaVhekI-ndVVlaVkknaewKVLIVdqlSr--VsaCCk-heI-se
1dn1a  (   4 )    igLkavVgekImhdVIkkvkkkgewKVLVVDqlSmrMlssCCkmtdImte
                    aaaaaaaa               bbbbb                    

                           60        70        80        90        100 
1epua  (  51 )    gItlvedInrrreplplleAVYLItPteeSVkcL-aDFqnpdnpQYrGAh
1dn1a  (  54 )    gItivedInkrReplpsleAVYLItpsekSVhsLisDFkdpptakYrAAh
                   bbbbbb           bbbbbb   aaaaaa              bbb

                           110       120       130       140       150 
1epua  ( 101 )    IFFTEaCpeeLfkeLckstTarfiktlkeinIAFlPyEsqIFSLdspdTF
1dn1a  ( 104 )    VFFTdsCpdaLfneLvksrAakviktlteinIAFlPyEsqVYSLdSadSF
                  bbb     aaaaaaaaa   33 bbbbbb     bbbb  bbb     aa

                           160       170       180       190       200 
1epua  ( 151 )    QVYYnpsraqggipnkerCAeQIATLCaTLgEyPsVRyrsdfdeNasFAq
1dn1a  ( 154 )    qSFYSphkaqmknpiLerLAeqIATLCATlkEyPaVRyrgeykdNalLAq
                  aaaa 333    aaaaaaaaaaaaaaaaaa    bb       aaaaaaa

                           210       220       230       240       250 
1epua  ( 201 )    lVqqkLdayraddpt-GegpqkdrSqLLILDRGFDPISPLLHeLtFQA-A
1dn1a  ( 204 )    lIqdkLdaykaddptmGegpdkarSqLLILDRGFDpsSPVLHeLtFQAMS
                  aaaaaaaaaa               bbbbbb333                

                           260       270       280       290       300 
1epua  ( 251 )    yDlLpIendvyky-----------evlLdekddlWve-RhqhIavVsqnv
1dn1a  ( 254 )    yDlLpIendvYkyetsgigearvkevlLdedddlWiaLRhkhiaeVsqeV
                           bb              bb               aaaaaaaa

                           310       320       330       340       350 
1epua  ( 301 )    tkklkqfadekrgikdlsql--kkpqyqkelskystHlhLaedC-kqyqq
1dn1a  ( 304 )    trsLkdfssskrMmrdlsqmlkkmpqyqkeLskysTHLhLAedCmkhyqg
                  aaaaaaaaaa                 aaaa   aaaaaaaaa   aaa 

                           360       370       380       390       400 
1epua  ( 359 )    hVdkLCkVEQdLA-gtdadgekirdh-rnIvpILldqkIsayDKIRIILL
1dn1a  ( 361 )    tvdkLCrvEQdLamgtdaegekikdpmraIvpILldanVstydkIRIILL
                   aaaaaaaaaaa                 aaaaa      aaaaaaaaaa

                           410       420       430       440       450 
1epua  ( 409 )    yIIhkgGiseenLaklvqhAhIpaeekwIInd-qnLgVpIiqdggrrkip
1dn1a  ( 411 )    yIflknGIteenLnkLiqhAqIppedseIItNMahLgVpIvtdstlrrrs
                  aaaa     aaaaaaaaaa    aaaaaaaa                   

                           460       470       480       490       500 
1epua  ( 459 )    qpYHthnRkerqadhtyq-sRWtPy-kdI-eaAVedkLdtrhYpFlnggg
1dn1a  ( 461 )    kp----erkeriseqtyqlsrWtPiIkdiMedTiedkLdtkhypyistr-
                                                                    

                           510       520       530       540       550 
1epua  ( 534 )    ksGPrLIIFVVGGIsYSE-rSAyeVtqtaknnWeVILGSThiLtpegLLr
1dn1a  ( 532 )    rsgPrLIIFILGGVsLNEMrCAyeVtqang-kweVLIGSThiLtpqkLLd
                      bbbbbbb         aaaaaa       bbbbbb     aaaaaa

                           560 
1epua  ( 584 )    dLrkisnp    
1dn1a  ( 581 )    tLkkLnktdeei
                  aa          


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