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Align your sequence(s)

Bacterial extracellular solute-binding protein, family 1

class : alpha beta number of structures : 3 average size : 329 average PID : 34 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1d9y rasmol 1 A 309 A ferric binding protein Neisseria gonorrhoeae 2.2 N/A
1mrp rasmol 1 - 309 - iron-utilization periplasmic protein (major ferric ironbinding protein) Haemophilus influenzae 1.6 17.4
1anf rasmol 1 - 369 - maltose-binding periplasmic protein (maltodextrin-binding protein) Escherichia coli 1.67 18.2
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : SBP_bac_1  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1d9ya  (   1 )         dItVYNGQ--hkeAAqaVAdaFtratgikVklncakgdqLAgqIk
1mrp   (   1 )         dItVYNGQ--hkeAAtaVakaFeqetgikVtlnsgkseqLagqLk
1anf   (   1 )    kieegkLvIwIngdKGynGLaeVGkkFekdtgikVtVehpd--kLeekFp
                        bbbb      aaaaaaaaaaaa      bbbb      aaaaaa

                           60        70        80        90        100 
1d9ya  (  44 )    eegsr-SpADVFYSeqIPaLatLsaanlLepLp--asTIneTrgk--gvp
1mrp   (  44 )    eegdk-TpADVFYTeQTatFadLseaglLapIs--eqtiqqTaqk--gVp
1anf   (  49 )    qvAatgdgPDIIFw-AHDrFGgYaqsglLaeItPdkafqdkLypfTWdaV
                  aa        bbbb      aaaaa            aaa          

                           110       120       130       140       150 
1d9ya  (  89 )    vAa-kkDWVALSGRSRVVVyDtrkLsekdLeksVlnYAt--pkWk----n
1mrp   (  89 )    lAp-kkDwIALSGRSRVVVYDhtklsekdMeksVldYAt--pkWk----g
1anf   (  98 )    ryngklIAYPIAvEALSLIynkdllp--npPktWeeIpalDkeLkakgks
                          bbbbbb  bbbbb                             

                           160       170       180       190       200 
1d9ya  ( 132 )    rIGYVptSgAFleQIVAIvklkg------------------eaaAlkWLk
1mrp   ( 132 )    kIGYVStsgAFleQVVALskmkg------------------dkvAlnWLk
1anf   ( 146 )    ALmFnLqePYFTWPLIaAd--gGyAFkyengkydikdVGVdnaGAkaGLt
                   b      aaaaaaaaaa                        aaaaaaaa

                           210       220       230       240       250 
1d9ya  ( 164 )    gLkey-----GkpyakNsvALqAVengeIdAALINnYywhafarekgvqn
1mrp   ( 164 )    gLkeN-----GklyakNsvALqAVengeVpAALINNYywynlakekgven
1anf   ( 194 )    fLvdLiknkhMnadTdysiAeaAFnkgeTAMtInGPWAWsnIdtsk----
                  aaaaa           aaaaaaaaa     bbbb    aaaaaa      

                           260       270       280       290       300 
1d9ya  ( 209 )    VhTrlnfvrh---rdPGAlVTySGAAVLksSqnkdeAkkFVa-fLAgkeG
1mrp   ( 209 )    LkSrLyfVrh---qdPGAlVsYSGAAVLkaSknqaeAqkFVd-fLAskkG
1anf   ( 240 )    vnygVtvLPtFkgqpSkPFVGVLSAGINaaspNkelAkeFLenyLLtdeg
                    bbbb             bbbbbbbb      aaaaaaaaa     aaa

                           310       320       330       340       350 
1d9ya  ( 255 )    QraLTavRA-EypLNphVvStfn----lepiakL-eaPqvsaTtvsekeh
1mrp   ( 255 )    QeaLVaarA-EypLradVvSpfn----LepyekL-eAPvvsaTtaqdkeh
1anf   ( 290 )    LeaVnkdkpLGaVALksyeeelAkdprIaaTmeNaqkGeiMPnipqMsaF
                  aaaaaaa    bb                                 aaaa

                           360       370       380 
1d9ya  ( 299 )    AtrLleqAgMk                   
1mrp   ( 299 )    AikLIeeAgLk                   
1anf   ( 340 )    WyAVrtAVinAAsgrqtvdeALkdAqtrIt
                  aaaaaaa                       


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