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Align your sequence(s)

Bacterial RNA polymerase, alpha chain

class : alpha plus beta number of structures : 2 average size : 225 average PID : 47 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1bdf rasmol 2 A 232 A DNA-directed RNA polymerase alpha chain Escherichia coli , and salmonella typhimurium 2.5 22.5
1i6v rasmol 6 A 229 A DNA-directed RNA polymerase alpha chain Thermus aquaticus 3.30 27.6
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : RNA_pol_A_bac  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1bdfa  (   2 )    qgsvteflkprlvdieqvssthAkVtlepLergfGhtlGnaLraiLlssM
1i6va  (   6 )          lkapvf-tattqgdhyGeFvleplergfGvtlGnplrriLlssI
                                          bb       aaaa aaaaaaaa    

                           60        70        80        90        100 
1bdfa  (  52 )    pgCaVteVeIdgVlheystkeGVqedIleILlnLkgLaVrVq--gkdevi
1i6va  (  49 )    pGTaVTSVyIedVlhefstIpgVkedVveIIlnLkeLvVrFldpkmaStt
                    b    bbb                aaaaaaaa             bbb

                           110       120       130       140       150 
1bdfa  ( 100 )    LtLnksgigpVtAadIthdgdVeivkpqhvIChLtdenAsIsMrIkVqrg
1i6va  (  99 )    LiLrAegpkeVrAvdFtpsadVeimnpdlhIAtLe-egGkLyMeVrVdrg
                  bbb         333                           bbbbbbb 

                           160       170       180       190       200 
1bdfa  ( 150 )    rgyvpast-rierpigrllVdAcysPVerIaynveaArveqrtdLDkLvI
1i6va  ( 148 )    vgyvpaerhGikdrinAIpVdAiFsPVrrVafqvedtrlgqrtdldkLTL
                    bb                 bb        bb               bb

                           210       220       230 
1bdfa  ( 204 )    eMeTngTidpeeAIrrAatilaeqleafv   
1i6va  ( 198 )    rIwtDgsvtPleALnqAvailkehlnyfanpe
                           aaaaaaaaaaaaaaa        


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