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Align your sequence(s)

Rel homology domain (RHD).

class : all beta number of structures : 2 average size : 298 average PID : 59 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1a3q rasmol 37 A 327 A nuclear factor nf-kappa-b p52 subunit Homo sapiens 2.1 21.9
1nfk rasmol 39 A 350 A nuclear factor nf-kappa-b p50 subunit Mus musculus 2.3 23
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : TIG  RHD  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1a3qa  (  37 )    gpyLvIveqPkqrgfrFrygcegpshgGLpGasSekgrktyPtVkIcnye
1nfka  (  39 )    gpyLqIleqPkqrgfrFryvcegpshgGLpGasseknkksyPqVkIcnyv
                    bbbb                                    bbbbb   

                           60        70        80        90        100 
1a3qa  (  87 )    gpAkIeVdLVthsdppraHAHsLvgkqCselGiCavsVgpkdMtaqFnnL
1nfka  (  89 )    gpAkVIVQLVtngknihLHAHsLvgkhÇe-dGvÇtvtAgpkdMvVgfanL
                     bbbbbbb           bbb         bbbb      bbb    

                           110       120       130       140       150 
1a3qa  ( 137 )    gVlhVtkknMmgtMiqkLqrqrlrsrp-------------------qglt
1nfka  ( 138 )    gIlhvtkkkVfetLearMteACirGyNPglLVhsdLaylqaegggdrqlt
                  bbb      aaaaaaaaaaaaa                            

                           160       170       180       190       200 
1a3qa  ( 168 )    eaeqreLeqeAkelkkvMdlsiVrLrFsAflrs------lplkpviSqpI
1nfka  ( 188 )    drekeiIrqAAvqqtkeMdlsvVrLMFTAFLpdstgsftrrlePvvSdAI
                  aaaaaaaaaaaaaaa      bbbbbbbbbb        bb   bb   b

                           210       220       230       240       250 
1a3qa  ( 218 )    hDskspgAsnLkIsrMdktagsvrGgdeVyLlCdkVqkddIeVrFyedd-
1nfka  ( 238 )    yDSkapnAsnLkIvrMdrtaGcVtGgeeIyLlCdkVqkddIqIrFyeeee
                  b           bbbb    bb     bbbbbb       bbbbbbb   

                           260       270       280       290       300 
1a3qa  ( 267 )    -engwqafGdfsptdVhkqyaIvFrTppYhkmkIerpvtVfLqLkRkrgg
1nfka  ( 288 )    nggvwegfGdfsptdVhrqfaIvFkTpkYkdvnitkpasVfVQLrRksdl
                      bbbb    333     bbbbb            bbbbbbbbb    

                           310 
1a3qa  ( 316 )    dvSdskqFtYyp 
1nfka  ( 338 )    etSepkpFlYype
                       bbbbbb  


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