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Align your sequence(s)

PotD/PotF

class : alpha beta number of structures : 2 average size : 331 average PID : 36 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1a99 rasmol 29 A 369 A putrescine-binding periplasmic protein Escherichia coli 2.2 18.5
1pot rasmol 26 - 347 - spermidine/putrescine-binding periplasmic protein Escherichia coli 1.8 19.8
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : SBP_bac_1  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1a99a  (  29 )    qktLhIyNWsdYiApdTvanFeketgIkVvydvFdsNevLegkLmagstg
1pot   (  26 )    nntLyFYNWteYVppgLleqFtketgikViystYesNetMyakLktykdG
                    bbbbbbb       aaaaaaaaa  bbbbbbb  aaaaaaaa      

                           60        70        80        90        100 
1a99a  (  79 )    -fDLVVPSAsFLerQltagvFqpLdkskLpewknLdpellklVakHDpdn
1pot   (  76 )    AyDLVVPStYYVdkMrkegmIqkIdkskLtnfsnLdpdmln--kpfDpnN
                             aaaaaa              333                

                           110       120       130       140       150 
1a99a  ( 128 )    kfAMPYMwaTTGIGYNvdkVkavLgenApvdsWdLILkpenLekLksçGV
1pot   ( 124 )    dySIPyIwGATAIGVngdavdpk-----sVtsWadLwkpeyk-----gsL
                     bbbbbbbbbbbbb                                 b

                           160       170       180       190       200 
1a99a  ( 178 )    SFLdapeEVFATVLnylgkdpnstkaddYtgpATdlLlkLrpNIryFhSs
1pot   ( 164 )    LLTdDAREVFQMALrklgysGnttdpkeIe-aAyneLkkLmpNVaafnSd
                  bb   aaaaaaaaaaa         aaaaa aaaaaaaa 333  bb   

                           210       220       230       240       250 
1a99a  ( 228 )    qYIndLAngdIÇVAIGWAGDVwQAsnrAkeakngvnVsFsIPkeGAMAFF
1pot   ( 213 )    nPAnPYmegeVnLGMIWNGSAFvArqa------gtpIdVvwPkeGGIFWM
                    aaaaa     bbbbbaaaaaaaa           bbbb      bbbb

                           260       270       280       290       300 
1a99a  ( 278 )    DVFAMPadAknkdeAYqFLnyLLrpdvVAhISdhVfYANANkaAtplVsa
1pot   ( 257 )    DSLAIPanAknkeGAlkLInFLLrpdVAkqvAetIGYPTPNlaArklLsp
                  bbb        aaaaaaaaaaaa aaaaaaaaaaa              a

                           310       320       330       340 
1a99a  ( 328 )    eVrenpgIyPpadvrakLftLkvQdpkIdrvRtrAWtkVksg
1pot   ( 307 )    evandktLYPdaetiknGewQndVga-assiYeeyYqkLkag
                  aaa        aaaa   b         aaaaaaaaaaa   


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