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Align your sequence(s)

Assemblin (Peptidase family S21)

class : all beta number of structures : 3 average size : 210 average PID : 37 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1wpo rasmol 9 A 256 A human cytomegalovirus protease Human cytomegalovirus 2.0 22.1
1at3 rasmol 17 A 247 A herpes simplex virus type ii protease Herpes simplex virus type ii 2.50 20.5
1vzv rasmol 11 - 231 - Varicella-zoster virus protease Varicella-zoster virus 3.0 22.3
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Peptidase_S21  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1wpoa  (   9 )    qAvapVyVGGFLARydqs-----llprdvVehwlha-valpLNInhddtA
1at3a  (  17 )     ravpIyVAGFLAlYdsgDpgelaldpdtVraALppenpLpINVdhrarC
1vzv   (  11 )       eALyVAGYLALysk-DegelnItpeiVrsalpptskIpINIdhrkdC
                       bbbbbb               aaaaa         bbbb      

                           60        70        80        90        100 
1wpoa  (  68 )    vVghVaA-qSVrdGLFCLGcVtSprFLeiVrraSekselVsrgpvsplqp
1at3a  (  66 )    eVGrVLAVvnDprGPFFVGlIaCvqLErvletaas-aa-------ilsre
1vzv   (  57 )    vVGeVIaIiedirGPFFLGIVrCpqLhaVlfeaah-snffgnrdsvlspl
                  bbbbbbb bb    bbbbbbb  aaaaaaaaaa                 

                           110       120       130       140       150 
1wpoa  ( 118 )    dkVVEfLSgsYAGLsLss----tpfkhVALCsVGrrrGTLAVYGrdpewV
1at3a  ( 115 )    erLLylITnyLPSVsLstkpdrtlFahVALcaiGrrlGTIVtYdtsldaA
1vzv   ( 106 )    erAlylVtnyLPSVsLssk---rlFthVALcvvGrrvGTVVnYdctpesS
                   aaaaaaaaa  bbbb           bbbb          bbb      

                           160       170       180       190       200 
1wpoa  ( 182 )    -qrFpdLtaadrdgLraqwqr-------gdpFrsd---sygllgnsvday
1at3a  ( 172 )    IapFrhLdpaTregVrreAaeaelalagrtWapgveaLthTllsTavnnm
1vzv   ( 163 )    IepFrvLsmeskarLlslvkdy--aglnkvwkvsedkLakVLlsTavnnm
                          aaaaaaaaa                     aaaaaaaaa   

                           210       220     
1wpoa  ( 231 )    -irerlpkLryDkqlVgVtereSyVka
1at3a  ( 222 )    mlrdrwslVaerrrqAgIa-ghtyLqa
1vzv   ( 211 )    llrdrwdvvakrrreAgim-gh     
                      aaaaaaaaaaa            


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