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Align your sequence(s)

PDZ Domain

class : all beta number of structures : 6 average size : 93 average PID : 31 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1be9 rasmol 301 A 402 A presynaptic density protein 95 Rattus norvegicus 1.82 N/A
1pdr rasmol 460 - 555 - presynaptic protein sap97 Homo sapiens 2.8 22.0
1qav rasmol 75 A 164 A nitric-oxide synthase, brain Mus musculus 1.90 20.8
1qau rasmol 14 A 102 A nitric-oxide synthase, brain Rattus norvegicus 1.25 23.9
1i16 rasmol 27 - 120 - interleukin-16 Homo sapiens N/A N/A
1kwa rasmol 487 A 573 A cask/lin-2 PDZ domain Homo sapiens 1.93 25.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
SMART : PDZ  
PFAM : PDZ  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1be9a  ( 301 )    flgeedipreprrIvIhrgs-tgLgFniigGe-d---geGIFIsfilagg
1pdr   ( 460 )          itreprkVvLhrgs-tgLgFnivGGe-d---geGIFIsfilagg
1qava  (  75 )          gslqrrrvtVrkadagglgIsikGGren---kmpIlIskifkgl
1qaua  (  14 )             nvisVrLfkrkvgglGFlvker-vs---kppViIsdlirgg
1i16   (  27 )           eatvctvtLekms-agLgFsLeggkgslhgdkpLtInrifkg-
1kwaa  ( 487 )             rsrlvqFqKntdepmgItLkmneln---h--CiVarimhgg
                             bbbbbb        bbbb           bbbbbb    

                           60        70        80        90        100 
1be9a  ( 346 )    pAdls-geLrkGDqIlsVngvdLrnasheqAaiaLknag--qtVtIiAqy
1pdr   ( 499 )    pAdls-geLrkGDrIisVnsvdLraAsheqAaaalknAg--qaVtIvAqy
1qava  ( 116 )    AAdqt-eaLfvgDAIlsVngedLssathdeAvqalkkTg--keVvLeVky
1qaua  (  51 )    aAeqs-glIqagDiIlaVndrpLvdlsydsAlevlrgiasethVvLiLrg
1i16   (  68 )    aaseqseTvqpgDeIlqLggTaMqgltrfeAwniIkalpd-gpVtIvIrr
1kwaa  ( 523 )    MIhrq-gtLhvgDeIreIngisVanqtveqLqkmlremr--gsItFkIvp
                  aaaa         bbbbb  bb     aaaaaaaaa      bbbbbbb 

                           110 
1be9a  ( 393 )    kpeeysrfea
1pdr   ( 546 )    rpeeysrqha
1qava  ( 163 )    mk        
1qaua  ( 100 )    peg       
1i16   ( 117 )    kslq      
1kwaa  ( 570 )    syre      
                            


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