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Align your sequence(s)

Class II histocompatibility antigen, alpha chain

class : multi domain number of structures : 4 average size : 181 average PID : 45 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1fng rasmol 1 A 182 A H-2 class II histocompatibility antigen, E-k alpha chain Mus musculus 1.90 22.1
1fv1 rasmol 3 A 181 A HLA class II histocompatibility antigen, Dr alpha chain Homo sapiens 1.90 23.3
1iak rasmol 1 A 181 A H-2 class II histocompatibility antigen, A-k alpha chain Mus musculus 1.90 21.4
1hdm rasmol 13 A 196 A class II histocompatibility antigen, M alpha chain Homo sapiens 2.50 19.7
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : ig  MHC_II_alpha  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1fnga  (   1 )    ikeehtiiq-aefyllpdkrGeFMfDfdgdEiFhVdieksetiwrleefa
1fv1a  (   3 )      eehviiq-aefylnpdqsGeFMfDfdgdEiFhVdmakketvwrleefg
1iaka  (   1 )    ieadhvGsyGitvYqspgdiGqYTfefdgdElFyVdldkketvwmlpefa
1hdma  (  13 )     lqnhtflh-tvyÇqdgspsvgLSEaydedqlfffdfsqntRvprlpefa
                        bbb bbbbb    bbbbbbbb  bbbbbbb    bbbb  3333

                           60        70        80        90        100 
1fnga  (  50 )    kfasfeaqgAlaniavdkanldvmkersnntpdanvaPeVtVlsrspvnl
1fv1a  (  50 )    rfasfeaqgAlaniavdkanleimtkrsnytpitnvpPeVtVltnspVel
1iaka  (  50 )    qlrrfepqgGlqniatgkhnleiltkrsnstpatneaPqAtVfpkspvll
1hdma  (  61 )    dwAqeqgdailfdkefçewmiqqipkldgkipvsrgfPiAeVftlkpLef
                  3     aaaaaaaaaaaaaaaaaaaaa           bbbbbb      

                           110       120       130       140       150 
1fnga  ( 100 )    gepniLiÇfIdkFsppvVnVtWlrngrpvtegvsetvfLprddhlfrKfh
1fv1a  ( 100 )    repnvLiÇfIdkFtPPvVnVtWlrngkpvttgvseTvfLpredhlfrKfh
1iaka  ( 100 )    gqpntLiÇfVdnIfPpvInItWlrnsksvtdgvyeTsffvnrdysfhklS
1hdma  ( 111 )    gkpNtLVÇfVsnLfpPmLtVnWhdhsvpve-gfgptfvsAvdglsfqAfS
                     bbbbbbbbbb     bbbbbb  bb     bb   bb     bbbbb

                           160       170       180     
1fnga  ( 150 )    yLtFlPstddfYDÇeVdHwgleeplrkhwefee    
1fv1a  ( 150 )    yLpflPstedvYdÇrVeHwgldepllkhwefd     
1iaka  ( 150 )    yLtFiPsdddiYdÇkVeHwgleepvlkhwepe     
1hdma  ( 160 )    yLnftPepsdifsÇiVtHepdrytaiaywvPrnalps
                  bbbb       bbbbbb       bbbbb        


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