Home | Search | Browse | Software | Help

Green/red fluorescent protein

class : alpha plus beta

number of structures : 2

average size : 222

average PID : 23 %

PDB code	start residue	start chain	end residue	end chain	name	source	resolution	R-factor
1gfl	1	A	230	A	green fluorescent protein	Aequorea victoria	1.9	21.4
1ggx	7	A	225	A	red fluorescent protein (fp583 or dsred(clontech))	Discosoma sp.	1.90	19.2
pir \| ali \| malform \| joy-html \| colour postscript \| postscript \| superimposed coordinates (RasMol)

external links

PFAM : GFP

other info

key to JOY annotation | show related PDB structures

alignment

show WITH Pfam family sequences

                           10        20        30        40        50  
1gfla  (   1 )    askGeelFtgvvpIlVeLdGdVnghkFsVsGegeGdAtyGkLtLkFiCtt
1ggxa  (   7 )          vIkefMrFkVrMegtVngheFeIegeGegrPyeGhNtVkLkVtk
                             bbbbbbbbbbb  bbbbbbbbbbbb    bbbbbbbb  

                           60        70        80        90        100 
1gfla  (  51 )    g-kLpVpWPTLVTTFYGVQCFSrYpdhMkrhDFFksAMpeGYvQeRtIfF
1ggxa  (  51 )    ggpLpFAWdILSPQF--SKVYVkHpadI--pdYKklSFpeGFkWeRvMnF
                         333        333           aaaa     bbbbbbbbb

                           110       120       130       140       150 
1gfla  ( 101 )    kdDGnYkTraeVkfegdtLVNrIeLkGidFkedgnILghkLeynYnsHnV
1ggxa  ( 100 )    edgGvVtVtQdSslqdgcFiYkVkFiGvnFpsdgpVmqkkTm-gWeastE
                      bbbbbbbbbbb  bbbbbbbbbbb                   bbb

                           160       170       180       190       200 
1gfla  ( 151 )    yImadkqknGIkVnFkIrHnIedgsvqlAdHyQqNtpigdgpVllPdnHy
1ggxa  ( 149 )    rLyprd--gvLkGeIhKaLklkdgghYlVeFkSiYmAkk--pvqlPgyYy
                  bbbbb    bbbbbbbbbbb     bbbbbbbbbbbb           bb

                           210       220       230 
1gfla  ( 201 )    LsTqSaLskdpnekrdHMvLlEfVtAagit  
1ggxa  ( 195 )    VdSkLditsh-nedytiVeQyErTeGrhhlfl
                  bbbbbbbb        bbbbbbbbbbb

For comments or questions, please send us email.