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Align your sequence(s)

subset of the extended AAA-ATPase domain family including DEAD/DEAH box helicases

class : alpha beta number of structures : 4 average size : 285 average PID : 30 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1d9x rasmol 2 A 414 A deoxyribonucleic acid repair protein uvrB Bacillus caldotenax 2.60 25.6
1c4o rasmol 2 A 409 A excinuclease ABC subunit B Thermus aquaticus 1.50 25.2
1hv8 rasmol 3 A 210 A probable ATP-dependent RNA helicase mj0669 Methanococcus jannaschii 3.00 27
1qde rasmol 12 A 222 A eukaryotic initiation factor 4a Saccharomyces cerevisiae 2.00 21.4
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : DEAD  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1d9xa  (   2 )                         egrFqlvApyepqgdqpqAiakLVdGLrr
1c4oa  (   2 )                           tFrYrgp-spkgdQpkAiagLveALrd
1hv8a  (   3 )           veynFneLnLsdnIlnaIrnkgfekPtdIQ-kVIplFLn----
1qdea  (  12 )    iqtnydkvvykFddMeLdenLlrGVfgygfeePsaiQqrAImPIie----
                                                      aaaaaaaaaa    

                           60        70        80        90        100 
1d9xa  (  31 )    gvkhQTLlGatgTgktFTiSnVIaqvn------kPTLVIAhnktlAgqly
1c4oa  (  28 )    gerfVTLlGatgTgktvTMAkVIeaLg------rPALVLAPnkilAaqLA
1hv8a  (  43 )    deynIVAqArtgsgktASFAIPLIelVnenn-gIEAIILTPtrelAiqVA
1qdea  (  58 )    g-hdVLAqaqsgtgKtGTFSIAALqrIdtsvkaPQALMLAPtrelAlqIq
                     bbbbb      aaaaaaaaaaaa         bbbb   aaaaaaaa

                           110       120       130       140       150 
1d9xa  (  75 )    seLkefFphNaVeyFVsyydyyqpeaYvpqtdtyiekdakindeidklrH
1c4oa  (  72 )    aeFrelFpeNaVeyFiSyydyyqpeaYvpgkdlyiekdasinpeierlrh
1hv8a  (  92 )    deIesLkgnknLkIAkIygg----------------------kaiypqik
1qdea  ( 107 )    kvVmaLAfhmdIkVhACi--------------------------------
                  aaaaaa       bb                             aaaaaa

                           160       170       180       190       200 
1d9xa  ( 125 )    sATsaLferrDVIIVASVSCIygLgspeeYrelvVslrvgmeiernallr
1c4oa  ( 122 )    sTTrsLltrrdVIVVAsVsAIyGLgdpreYrarnlvg-------------
1hv8a  ( 120 )    aLk------nANIVVGtPgrIl------dhinr-----------------
1qdea  ( 135 )    glr------dAQIVVGTPgrVf------dNiqr-----------------
                  aaa         bbbb            aaaa                  

                           210       220       230       240       250 
1d9xa  ( 175 )    rlvdIqydrndifrgtfrvrgdvveifpasrdehcirveffgdeieaEvd
1c4oa  ( 237 )    --------------------------------------------------
1hv8a  ( 141 )    --------------------------------------------------
1qdea  ( 156 )    --------------------------------------------------
                                                                    

                           260       270       280       290       300 
1d9xa  ( 229 )    altgkvlgerehvaIFPashfvtreekmrlAIqnIeqeLeerLaelraqg
1c4oa  ( 237 )    ------------fvlfpatHylspe-gleeILkeIekeLwervryFeerg
1hv8a  ( 141 )    --------------------------------------------------
1qdea  ( 156 )    --------------------------------------------------
                                                                    

                           310       320       330       340       350 
1d9xa  ( 279 )    klleAqrLeqrTryDLemMremgfCsGienYsrhLalrppgstpyTLLdY
1c4oa  ( 274 )    evlyAqrLkerTlydLemLrvmgtCpGvenYaryFtgkapgeppyTLLdY
1hv8a  ( 141 )    ----------------------------------------------gtLn
1qdea  ( 156 )    ----------------------------------------------rrFr
                                                                    

                           360       370       380       390       400 
1d9xa  ( 329 )    FpddFLIIVdeShvTLpqLrgmyngdrarkqvLvdhGfRLpSAldnrPLt
1c4oa  ( 324 )    FpedFLVFLdeShvTVpqLqgmyrgdyarkktLVdyGFrLpSAldNRPLr
1hv8a  ( 145 )    LknVkyFILDeAdeln--------gfikdVekILn--aCnk---------
1qdea  ( 160 )    tdkIkMFILDeAdeMLss------gfkeqIyqIFt--lLpp---------
                       bbbbb aaaaaa         aaaaaaaaa               

                           410       420       430       440 
1d9xa  ( 379 )    FeeFeqkInqIIYVSatPgpyElehSp------gvveQiirp
1c4oa  ( 374 )    feeFlerVsqVVFVSatPgpfElahSg------rvveQiirp
1hv8a  ( 178 )    -------dkrILLFSat-preIlnLAkky-gdysfikaki  
1qdea  ( 193 )    -------tTqVVLLSatmpndVleVTtkfMrnpvrIl     
                           bbbbb     aaaaaa        bbbb     


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