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Align your sequence(s)

Colicin pore forming domain

class : membrane bound all alpha number of structures : 3 average size : 194 average PID : 35 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1col rasmol 5 A 201 A colicin A Citrobacter freundii 2.40 18.0
1a87 rasmol 187 - 387 - colicin N Escherichia coli 3.10 17.3
1cii rasmol 440 - 624 - colicin IA Escherichia coli 3.00 24.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : Colicin  
other info key to JOY annotation | show related PDB structures

                           10        20        30        40        50  
1cola  (   5 )      akdereLLekTSelIagMGdkIGehlgdkYkaIAkdIAdnIknFqgkt
1a87   ( 187 )    ekeknEkeALlkAselVsgmGdkLGeyLgvkYknvAkeVAndIknFhgrn
1cii   ( 440 )    krkqdelkatkdAinftteflksvsekygakAeqLAreMagqAk---gkk
                       aaaaaaaaaaaaaaaaaaaaaaa  aaaaaaaaaaa         

                           60        70        80        90        100 
1cola  (  53 )    IrsfddAmaSLnkItanpaMkinkadrdaLvnaWkhvdAqdmAnkLgnls
1a87   ( 237 )    irsyneAmasLnkVlanpkMkvnksdkdaIvnAWkqVnakdMankIgnlg
1cii   ( 487 )    IrnveeAlkTYekyradInkkiNakdraaIAaaLesVklsdIssnlnrFs
                     aaaaaaaaaa a         aaaaaaaaaaa   aaaaaaaaa   

                           110       120       130       140       150 
1cola  ( 103 )    kaFkvadvvmkVekVrekSieGYetgnwgpLMleVesWvlsgiasSvALG
1a87   ( 287 )    kaFkvadlaikVekIrekSieGYntgnWGpLLleVesWiiggvvaGVAIS
1cii   ( 537 )    rGlgyagkftsLadWIteFGkAVrtenWrpLFvkTetIIa-----gnaAt
                             aaaaaaaaaaaa     aaaaaaa             aa

                           160       170       180       190       200 
1cola  ( 153 )    IFSATLGaYAlsLgvpaiAVgiAGiLLAAVVGALIddkFAdaLnneiIr 
1a87   ( 337 )    LFGAVLsfLpis-gLavtALGVIGIMTISYLSSFidanrVsnInniIssV
1cii   ( 582 )    ALVALVFSIltgsaL----giiGYGLLMAVTGALIdesLVekAnkfw   
                  aaaaaaa            aaaaaaaaaaaaaaaa  aaaaaaa      

                    
1cola               
1a87   ( 386 )    Ir
1cii                
                    


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