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Bacteriorhodopsin

class : membrane bound all alpha

number of structures : 3

average size : 226

average PID : 30 %

PDB code	start residue	start chain	end residue	end chain	name	source	resolution	R-factor
1e12	24	A	262	A	Halorhodopsin	Halobacterium salinarum	1.8	23.7
1c3w	5	A	231	A	bacteriorhodopsin/lipid complex	Halobacterium salinarum	1.55	N/A
1jgj	1	A	217	A	sensory rhodopsin II	Natronomonas pharaonis	2.40	23.3
pir \| ali \| malform \| joy-html \| colour postscript \| postscript \| superimposed coordinates (RasMol)

external links

PFAM : Bac_rhodopsin

other info

key to JOY annotation | show related PDB structures

alignment

show WITH Pfam family sequences

                           10        20        30        40        50  
1e12a  (  24 )    renallssSLwvNvalAgiailvFvymGrtIrpgrPrlIwgATlmIPlvS
1c3wa  (   5 )     tgrpEwiwLalGTaLMGlGTlyFlvkGmgvsdpdAkkFYaiTTlVPAIA
1jgja  (   1 )      mvglttlFwlGaigMlvGtlaFawaGrdAg-sgerrYyvtLvgISgiA
                        aaaaaaaaaaaaaaaaaaaaa         aaaaaaaaaaaaaa

                           60        70        80        90        100 
1e12a  (  74 )    isSYlgLlsgltVgmieMpagHalagemvrSQwGRYltWalSTpmILlAL
1c3wa  (  54 )    ftMYlsMllgyGltmVpfg------geqnpIYwARYaDWlfTTPlLLlDL
1jgja  (  48 )    avaYavMAlgvgwvpva----------eRtVFvprYiDWilTTplIVyFL
                  aaaaaaaa     bb              bb  aaaaaaaaaaaaaaaaa

                           110       120       130       140       150 
1e12a  ( 124 )    GlLAdVdlgslftViaaDigMCvtGlaAAmttsallfRwafyaiScafFv
1c3wa  (  98 )    AlLVdadqgtilaLvgaDgiMIgtGlvGAltk-vysyRFvwWAiSTaaMl
1jgja  (  88 )    GlLAgLdsrefgiVitlNtvVMlaGfaGAmvp-g-ieryalfgmGavafi
                  aaa    aaaaaaaaaaaaaaaaaaaaaaa      aaaaaaaaaaaaaa

                           160       170       180       190       200 
1e12a  ( 174 )    vVlsaLvtdWaasAssag--TaeiFdtLrvlTvvlWlgYpivWavgVEGl
1c3wa  ( 147 )    yIlyvLffgf-----smrpeVastFkvLrnvTvvlWsAYPvVWLiGsEGA
1jgja  ( 136 )    gLvyyLvgpMtesAsqrssgiksLYvrLrnlTvvlWaiYpfiWllGppGv
                  aaaaaaa              aaaaaaaaaaaaaaa aaaaaaaa     

                           210       220       230       240 
1e12a  ( 222 )    AlvqsvGatSwaYSvlDvfAKyvFAfiLLrwVannertVAv
1c3wa  ( 197 )    giv-plniETllFMvlDVsAKVgFGliLLrsrAIfg     
1jgja  ( 186 )    all-tptvDValIvyLDlvTKvgFGfiAldaaa        
                       aaaaaaaaaaaaaaa aaaaaaaaa

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