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Align your sequence(s)

AhpC/TSA family

class : alpha beta number of structures : 3 average size : 195 average PID : 45 %

PDB
code
start
residue
start
chain
end
residue
end
chain
name source resolution R-factor
1qq2 rasmol 3 A 175 A peroxiredoxin 1 Rattus norvegicus 2.60 21.6
1qmv rasmol 3 A 198 A peroxiredoxin 2 Homo sapiens 1.7 19.2
1prx rasmol 5 A 224 A antioxidant protein 2 Homo sapiens 2.0 19.1
pir | ali | malform | joy-html | colour postscript | postscript | superimposed coordinates (RasMol)

external links
PFAM : AhpC-TSA  
other info key to JOY annotation | show related PDB structures
alignment show WITH Pfam family sequences

                           10        20        30        40        50  
1qq2a  (   3 )    sgnAkighpApsfkatAVmpdgqfkdIslsd-ykgkYVVFFFYplDftfv
1qmva  (   3 )    SgnArigkpApdFkatAVv-dgafkeVklsd-ykgkYVVLFFYPlDftf-
1prxa  (   5 )       lllgdvApnfeanTtv-----grirFhdfLgdswGILFSHPrDftp-
                               bbbb       bbbb        bbbbbb        

                           60        70        80        90        100 
1qq2a  (  52 )    cpTEIiaFSdraeeFkklnCqVIGASVdshfsHlawintpkkq----gGL
1qmva  (  50 )    vpteIiaFSnrAedFrklgCeVLGVSVdsqftHlaWintprke----gGL
1prxa  (  46 )    vttELGrAAklapeFakrnVkLIALSIdsvedHlaWSkdInaynseepte
                       aaaaa aaaaa   bbbbbbb   aaaaaaaa             

                           110       120       130       140       150 
1qq2a  (  98 )    gpMnIPLVSDpkrtiAqdYgVlka----degiS--frGLFIIDdkgiLrq
1qmva  (  97 )    gpLnIpLLADvtrrLSedYgVlkt----degiA--yRGLFIIdgkgvLrq
1prxa  (  97 )    -kLpFpIIdDrnrelAilLgMldpaekdekgmPvtARvVFVFGpdkkLkl
                        bbb    aaaaa                   bbbbb     bbb

                           160       170       180       190       200 
1qq2a  ( 142 )    itindlpvgrsVdeIlrlVqafqftdkhgevcpa                
1qmva  ( 141 )    itvndlpvgRsvdeAlrlVqafqytdehgevcpagWkpgsdTikp---nv
1prxa  ( 146 )    silypattgRnFdeIlrvVislqltaekrVatpvdWkdgdsVmVlptIpe
                  bbb        aaaaaaaaaaaaaaaa                       

                           210       220       
1qq2a                                          
1qmva  ( 188 )    ddskeyfskhn                  
1prxa  ( 196 )    eeAkklFpkgvftkelpsgkkylryTpqp
                                               


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